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Non-bonded interaction parameters and
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NAMD 2.5b1 User's Guide
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Building solvent around a
Contents
Basic Simulation Parameters
Subsections
Non-bonded interaction parameters and computations
Non-bonded van der Waals interactions
Non-bonded electrostatic interactions
Nonbonded interaction distance-testing
Full electrostatic integration
NAMD configuration parameters
Timestep parameters
Simulation space partitioning
Basic dynamics
DPMTA parameters
PME parameters
Full direct parameters
Multiple timestep parameters
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