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RedundMolecularCoor Member List

This is the complete list of members for RedundMolecularCoor, including all inherited members.

• all_ (defined in IntMolecularCoor) [protected]
• all_to_cartesian(const Ref< Molecule > &,RefSCVector &internal) [virtual]
• all_to_internal(const Ref< Molecule > &,RefSCVector &internal) [virtual]
• bends_ (defined in IntMolecularCoor) [protected]
• bonds_ (defined in IntMolecularCoor) [protected]
• cartesian_tolerance_ (defined in IntMolecularCoor) [protected]
• change_coordinates() [virtual]
• class_desc() const
• class_name() const
• class_version() const
• constant_ (defined in IntMolecularCoor) [protected]
• coordinate_tolerance_ (defined in IntMolecularCoor) [protected]
• debug_ (defined in MolecularCoor) [protected]
• decouple_bends_ (defined in IntMolecularCoor) [protected]
• decouple_bonds_ (defined in IntMolecularCoor) [protected]
• dereference() [inline]
• DescribedClass() (defined in DescribedClass)
• DescribedClass(const DescribedClass &) (defined in DescribedClass)
• dim() [virtual]
• dim_ (defined in IntMolecularCoor) [protected]
• dim_natom3() [inline]
• dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in SavableState) [static]
• dnatom3_ (defined in MolecularCoor) [protected]
• dvc_ (defined in IntMolecularCoor) [protected]
• extra_bonds_ (defined in IntMolecularCoor) [protected]
• extras_ (defined in IntMolecularCoor) [protected]
• fixed_ (defined in IntMolecularCoor) [protected]
• followed_ (defined in IntMolecularCoor) [protected]
• form_coordinates(int keep_variable=0) [virtual]
• form_K_matrix(RefSCDimension &dredundant, RefSCDimension &dfixed, RefSCMatrix &K, int *&is_totally_symmetric) (defined in IntMolecularCoor) [protected]
• form_print_constant_ (defined in IntMolecularCoor) [protected]
• form_print_molecule_ (defined in IntMolecularCoor) [protected]
• form_print_simples_ (defined in IntMolecularCoor) [protected]
• form_print_variable_ (defined in IntMolecularCoor) [protected]
• generator_ (defined in IntMolecularCoor) [protected]
• given_fixed_values_ (defined in IntMolecularCoor) [protected]
• guess_hessian(RefSymmSCMatrix &hessian) [virtual]
• identifier() [inline]
• init() [protected, virtual]
• IntMolecularCoor(StateIn &) (defined in IntMolecularCoor)
• IntMolecularCoor(Ref< Molecule > &mol) (defined in IntMolecularCoor)
• IntMolecularCoor(const Ref< KeyVal > &)
• inverse_hessian(RefSymmSCMatrix &) [virtual]
• key_restore_state(StateIn &si, const char *keyword) [static]
• lock_ptr() const
• managed() const [inline]
• managed() const [inline]
• matrixkit() const (defined in MolecularCoor) [inline]
• matrixkit_ (defined in MolecularCoor) [protected]
• max_update_disp_ (defined in IntMolecularCoor) [protected]
• max_update_steps_ (defined in IntMolecularCoor) [protected]
• MolecularCoor(Ref< Molecule > &) (defined in MolecularCoor)
• MolecularCoor(StateIn &) (defined in MolecularCoor)
• MolecularCoor(const Ref< KeyVal > &)
• molecule() const [inline]
• molecule_ (defined in MolecularCoor) [protected]
• nconstrained() [virtual]
• new_coords() [protected, virtual]
• nextra_bonds_ (defined in IntMolecularCoor) [protected]
• nreference() const [inline]
• only_totally_symmetric_ (defined in IntMolecularCoor) [protected]
• operator=(const SavableState &) (defined in SavableState)
• operator=(const DescribedClass &) (defined in DescribedClass)
• operator=(const RefCount &) (defined in RefCount) [inline, protected]
• outs_ (defined in IntMolecularCoor) [protected]
• print(std::ostream &=ExEnv::out()) const [virtual]
• print_constant(std::ostream &=ExEnv::out()) const (defined in IntMolecularCoor) [virtual]
• print_simples(std::ostream &=ExEnv::out()) const (defined in IntMolecularCoor) [virtual]
• print_variable(std::ostream &=ExEnv::out()) const (defined in IntMolecularCoor) [virtual]
• read_keyval(const Ref< KeyVal > &) [protected, virtual]
• RedundMolecularCoor(Ref< Molecule > &mol) (defined in RedundMolecularCoor)
• RedundMolecularCoor(StateIn &) (defined in RedundMolecularCoor)
• RedundMolecularCoor(const Ref< KeyVal > &)
• RefCount() (defined in RefCount) [inline, protected]
• RefCount(const RefCount &) (defined in RefCount) [inline, protected]
• reference() [inline]
• restore_state(StateIn &si) [static]
• SavableState() (defined in SavableState) [protected]
• SavableState(const SavableState &) (defined in SavableState) [protected]
• SavableState(StateIn &) [protected]
• save_data_state(StateOut &) [virtual]
• save_object_state(StateOut &)
• save_state(StateOut &)
• save_state(SavableState *s, StateOut &) (defined in SavableState) [static]
• save_vbase_state(StateOut &) [virtual]
• scale_bends_ (defined in IntMolecularCoor) [protected]
• scale_bonds_ (defined in IntMolecularCoor) [protected]
• scale_outs_ (defined in IntMolecularCoor) [protected]
• scale_tors_ (defined in IntMolecularCoor) [protected]
• simple_tolerance_ (defined in IntMolecularCoor) [protected]
• symmetry_tolerance_ (defined in IntMolecularCoor) [protected]
• to_cartesian(const Ref< Molecule > &,const RefSCVector &internal) (defined in IntMolecularCoor) [virtual]
• to_cartesian(RefSCVector &cartesian, RefSCVector &internal) [virtual]
• to_cartesian(RefSymmSCMatrix &cart, RefSymmSCMatrix &internal) [virtual]
• MolecularCoor::to_cartesian(const RefSCVector &internal)
• to_internal(RefSCVector &internal) [virtual]
• to_internal(RefSCVector &internal, RefSCVector &cartesian) [virtual]
• to_internal(RefSymmSCMatrix &internal, RefSymmSCMatrix &cart) [virtual]
• tors_ (defined in IntMolecularCoor) [protected]
• unlock_ptr() const
• unmanage() [inline]
• update_bmat_ (defined in IntMolecularCoor) [protected]
• use_locks(bool inVal)
• variable_ (defined in IntMolecularCoor) [protected]
• watched_ (defined in IntMolecularCoor) [protected]
• ~DescribedClass() (defined in DescribedClass) [virtual]
• ~Identity() (defined in Identity) [virtual]
• ~IntMolecularCoor() (defined in IntMolecularCoor) [virtual]
• ~MolecularCoor() (defined in MolecularCoor) [virtual]
• ~RedundMolecularCoor() (defined in RedundMolecularCoor) [virtual]
• ~RefCount() (defined in RefCount) [virtual]
• ~SavableState() (defined in SavableState) [virtual]

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